Sequence Read Archive (SRA) Database

Multi-omics Raw Sequencing Data Repository

Access and download raw sequencing data from NCBI SRA for 131 dormant species.
Covering six major omics types: genomics, transcriptomics, epigenomics, proteomics, metabolomics, and microbiomics.

Popular searches: U. americanus | U. parryii | R. ferrumequinum | M. lucifugus

156030

SRA Runs

131

Species

6

Data Types

30,419

Publications

150TB+

Data Size

Browse by Omics Type

Explore raw sequencing data across six major data types. Select a data type in the table below to view specific SRA entries.

Genomics (DNA)

62,575 SRA runs

Whole genome sequencing, resequencing, and population genomics data

WGS WES Resequencing

Transcriptomics (RNA)

71,953 SRA runs

Bulk RNA-seq, single-cell RNA-seq, and isoform sequencing

RNA-seq scRNA-seq Iso-seq

Epigenomics (EPT)

5,414 SRA runs

DNA methylation, histone modifications, and chromatin accessibility

ChIP-seq ATAC-seq BS-seq

Proteomics (PRT)

941 SRA runs

Mass spectrometry-based proteomics and protein modification data

LC-MS/MS DIA PTM

Metabolomics (MET)

223 SRA runs

LC-MS and GC-MS based metabolite profiling during dormancy

LC-MS GC-MS NMR

Microbiomics (MIC)

14,924 SRA runs

16S rRNA, metagenomics, and microbiome profiling from host-associated samples

16S Metagenome Shotgun

Species Data Matrix

Taxonomy Click to expand full lineage	Data Type	SRA ID External Link	Reference	Date	Detail
🐻 Mammalia Mammalia › › › Order Afrosoricida Family Tenrecidae Genus Echinops Echinops telfairi Order Carnivora Family Mustelidae Genus Meles Meles meles Family Ursidae Genus Ursus Ursus americanus Ursus arctos Ursus maritimus Ursus thibetanus Order Chiroptera Family Rhinolophidae Genus Rhinolophus Rhinolophus ferrumequinum Family Vespertilionidae Genus Antrozous Antrozous americanus Antrozous pallidus Genus Eptesicus Eptesicus fuscus Genus Myotis Myotis lucifugus Genus Nyctalus Nyctalus noctula Order Diprotodontia Family Burramyidae Genus Cercartetus Cercartetus nanus Order Erinaceomorpha Family Erinaceidae Genus Erinaceus Erinaceus europaeus Order Monotremata Family Tachyglossidae Genus Tachyglossus Tachyglossus aculeatus Order Primates Family Cheirogaleidae Genus Cheirogaleus Cheirogaleus medius Genus Microcebus Microcebus murinus Family Lorisidae Genus Nycticebus Nycticebus pygmaeus Order Rodentia Family Cricetidae Genus Mesocricetus Mesocricetus auratus Genus Peromyscus Peromyscus leucopus Peromyscus maniculatus Genus Phodopus Phodopus sungorus Family Dipodidae Genus Jaculus Jaculus orientalis Family Gliridae Genus Dryomys Dryomys nitedula Genus Eliomys Eliomys quercinus Genus Glis Glis glis Genus Muscardinus Muscardinus avellanarius Family Muridae Genus Mus Mus musculus Family Sciuridae Genus Callospermophilus Callospermophilus lateralis Genus Cynomys Cynomys ludovicianus Genus Ictidomys Ictidomys tridecemlineatus Genus Marmota Marmota flaviventris Marmota himalayana Marmota marmota Marmota monax Genus Otospermophilus Otospermophilus beecheyi Genus Spermophilus Spermophilus citellus Spermophilus dauricus Genus Tamias Tamias asiaticus Tamias sibiricus Tamias striatus Genus Urocitellus Urocitellus parryii Click on Mammalia to select a species		-	-	-	-
🐦 Aves Aves › › Order Apodiformes Family Trochilidae Genus Calypte Calypte anna Genus Campylopterus Campylopterus hemileucurus Order Caprimulgiformes Family Caprimulgidae Genus Caprimulgus Caprimulgus europaeus Genus Phalaenoptilus Phalaenoptilus nuttallii Click on Aves to select a species		-	-	-	-
🐍 Reptilia Reptilia › › Order Crocodylia Family Alligatoridae Genus Alligator Alligator mississippiensis Alligator sinensis Genus Caiman Caiman latirostris Family Gavialidae Genus Gavialis Gavialis gangeticus Order Squamata Family Agamidae Genus Phrynocephalus Phrynocephalus spp. Genus Pogona Pogona vitticeps Family Colubridae Genus Diadophis Diadophis punctatus Genus Elaphe Elaphe carinata Genus Euprepiophis Euprepiophis mandarinus Genus Lampropeltis Lampropeltis californiae Genus Natrix Natrix natrix Genus Pantherophis Pantherophis guttatus Genus Pituophis Pituophis catenifer Genus Thamnophis Thamnophis sirtalis Family Crotaphytidae Genus Crotaphytus Crotaphytus collaris Family Dactyloidae Genus Anolis Anolis carolinensis Family Gekkonidae Genus Phyllodactylus Phyllodactylus xanti Family Lacertidae Genus Eremias Eremias carinata Eremias multiocellata Genus Lacerta Lacerta agilis Genus Zootoca Zootoca vivipara Family Phrynosomatidae Genus Sceloporus Sceloporus undulatus Family Viperidae Genus Crotalus Crotalus viridis Genus Gloydius Gloydius brevicaudus Genus Vipera Vipera berus Order Testudines Family Chelydridae Genus Chelydra Chelydra serpentina Family Emydidae Genus Chrysemys Chrysemys picta Genus Glyptemys Glyptemys insculpta Genus Malaclemys Malaclemys terrapin Genus Trachemys Trachemys scripta elegans Family Geoemydidae Genus Mauremys Mauremys reevesii Family Testudinidae Genus Gopherus Gopherus polyphemus Genus Terrapene Terrapene carolina Genus Testudo Testudo hermanni Click on Reptilia to select a species		-	-	-	-
🐸 Amphibia Amphibia › › › Order Anura Family Bufonidae Genus Anaxyrus Anaxyrus americanus Genus Bufo Bufo bufo Bufo gargarizans Bufo raddei Genus Bufotes Bufotes pewzowi Genus Rhinella Rhinella marina Family Dicroglossidae Genus Fejervarya Fejervarya multistriata Family Hylidae Genus Hyla Hyla chinensis Hyla cinerea Genus Pseudacris Pseudacris regilla Family Ranidae Genus Lithobates Lithobates catesbeianus Lithobates pipiens Genus Nanorana Nanorana parkeri Genus Pelophylax Pelophylax esculentus Pelophylax nigromaculatus Genus Rana Rana dybowskii Rana sylvatica Rana temporaria Family Scaphiopodidae Genus Scaphiopus Scaphiopus holbrookii Genus Spea Spea bombifrons Order Caudata Family Ambystomatidae Genus Ambystoma Ambystoma tigrinum Family Cryptobranchidae Genus Andrias Andrias davidianus Family Hynobiidae Genus Hynobius Hynobius chinensis Family Salamandridae Genus Notophthalmus Notophthalmus viridescens Genus Pleurodeles Pleurodeles waltl Genus Salamandra Salamandra salamandra Click on Amphibia to select a species		-	-	-	-
🦋 Insecta Insecta › › › Order Coleoptera Family Cerambycidae Genus Anoplophora Anoplophora glabripennis Family Chrysomelidae Genus Diabrotica Diabrotica virgifera Genus Leptinotarsa Leptinotarsa decemlineata Family Coccinellidae Genus Coccinella Coccinella septempunctata Family Tenebrionidae Genus Tribolium Tribolium castaneum Order Diptera Family Culicidae Genus Anopheles Anopheles gambiae Genus Culex Culex pipiens Family Drosophilidae Genus Drosophila Drosophila melanogaster Order Hemiptera Family Cimicidae Genus Cimex Cimex lectularius Family Delphacidae Genus Nilaparvata Nilaparvata lugens Order Hymenoptera Family Apidae Genus Ceratina Ceratina calcarata Family Pteromalidae Genus Nasonia Nasonia vitripennis Family Vespidae Genus Polistes Polistes dominula Order Lepidoptera Family Bombycidae Genus Bombyx Bombyx mori Family Crambidae Genus Chilo Chilo partellus Family Noctuidae Genus Helicoverpa Helicoverpa armigera Genus Spodoptera Spodoptera frugiperda Family Nymphalidae Genus Danaus Danaus plexippus Genus Heliconius Heliconius melpomene Family Papilionidae Genus Papilio Papilio machaon Family Sphingidae Genus Manduca Manduca sexta Order Orthoptera Family Acrididae Genus Locusta Locusta migratoria Click on Insecta to select a species		-	-	-	-
🐌 Gastropoda Gastropoda › › › Order Stylommatophora Family Achatinidae Genus Lissachatina Lissachatina immaculata Family Helicidae Genus Cornu Cornu aspersum Genus Helix Helix pomatia Click on Gastropoda to select a species		-	-	-	-

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