9 integrated analysis pipelines covering BLAST annotation, differential expression, single-cell analysis, spatial transcriptomics, genome assembly, epigenomics, proteomics, metabolomics, microbiome, and multi-omics integration.
Sequence alignment, functional annotation, and phylogenetic tree construction
Differential expression analysis, pathway enrichment, and volcano visualization
Cell clustering, marker identification, and trajectory inference
H&E image registration, spot clustering, and spatial gene expression
De novo assembly, gene prediction, Circos visualization, and GWAS analysis
DNA methylation, histone modification, ATAC-seq, and chromatin accessibility
MS-based protein quantification, iTRAQ/TMT analysis, and metabolite profiling
16S rRNA profiling, metagenomic assembly, alpha/beta diversity, and PCoA
Joint PCA, WGCNA co-expression, and multi-layer correlation networks
