Sequence Read Archive (SRA) Database

Multi-omics Raw Sequencing Data Repository

Access and download raw sequencing data from NCBI SRA for 131 dormant species.
Covering six major omics types: genomics, transcriptomics, epigenomics, proteomics, metabolomics, and microbiomics.

Popular searches: S. dauricus | U. americanus | U. parryii | R. ferrumequinum | M. lucifugus

156030

SRA Runs

131

Species

6

Data Types

30,419

Publications

150TB+

Data Size

Browse by Omics Type

Explore raw sequencing data across six major data types. Select a data type in the table below to view specific SRA entries.

Genomics (DNA)

62,575 SRA runs

Whole genome sequencing, resequencing, and population genomics data

WGS WES Resequencing

Transcriptomics (RNA)

71,953 SRA runs

Bulk RNA-seq, single-cell RNA-seq, and isoform sequencing

RNA-seq scRNA-seq Iso-seq

Epigenomics (EPT)

5,414 SRA runs

DNA methylation, histone modifications, and chromatin accessibility

ChIP-seq ATAC-seq BS-seq

Proteomics (PRT)

941 SRA runs

Mass spectrometry-based proteomics and protein modification data

LC-MS/MS DIA PTM

Metabolomics (MET)

223 SRA runs

LC-MS and GC-MS based metabolite profiling during dormancy

LC-MS GC-MS NMR

Microbiomics (MIC)

14,924 SRA runs

16S rRNA, metagenomics, and microbiome profiling from host-associated samples

16S Metagenome Shotgun

Species Data Matrix

Taxonomy Click to expand full lineage	Data Type	SRA ID External Link	Reference	Date	Detail
🐻 Mammalia Mammalia › › › Order Afrosoricida Family Tenrecidae Genus Echinops E. telfairi Order Carnivora Family Mustelidae Genus Meles M. meles Family Ursidae Genus Ursus U. americanus U. arctos U. maritimus U. thibetanus Order Chiroptera Family Rhinolophidae Genus Rhinolophus R. ferrumequinum Family Vespertilionidae Genus Antrozous Antr. americanus A. pallidus Genus Eptesicus E. fuscus Genus Myotis M. lucifugus Genus Nyctalus N. noctula Order Diprotodontia Family Burramyidae Genus Cercartetus C. nanus Order Erinaceomorpha Family Erinaceidae Genus Erinaceus E. europaeus Order Monotremata Family Tachyglossidae Genus Tachyglossus T. aculeatus Order Primates Family Cheirogaleidae Genus Cheirogaleus C. medius Genus Microcebus M. murinus Family Lorisidae Genus Nycticebus N. pygmaeus Order Rodentia Family Cricetidae Genus Mesocricetus M. auratus Genus Peromyscus P. leucopus P. maniculatus Genus Phodopus P. sungorus Family Dipodidae Genus Jaculus J. orientalis Family Gliridae Genus Dryomys D. nitedula Genus Eliomys E. quercinus Genus Glis G. glis Genus Muscardinus M. avellanarius Family Muridae Genus Mus M. musculus Family Sciuridae Genus Callospermophilus C. lateralis Genus Cynomys C. ludovicianus Genus Ictidomys I. tridecemlineatus Genus Marmota M. flaviventris M. himalayana M. marmota M. monax Genus Otospermophilus O. beecheyi Genus Spermophilus S. citellus S. dauricus Genus Tamias T. asiaticus T. sibiricus T. striatus Genus Urocitellus U. parryii Click on Mammalia to select a species		-	-	-	-
🐦 Aves Aves › › Order Apodiformes Family Trochilidae Genus Calypte C. anna Genus Campylopterus C. hemileucurus Order Caprimulgiformes Family Caprimulgidae Genus Caprimulgus C. europaeus Genus Phalaenoptilus P. nuttallii Click on Aves to select a species		-	-	-	-
🐍 Reptilia Reptilia › › Order Crocodylia Family Alligatoridae Genus Alligator A. mississippiensis A. sinensis Genus Caiman C. latirostris Family Gavialidae Genus Gavialis G. gangeticus Order Squamata Family Agamidae Genus Phrynocephalus P. spp. Genus Pogona P. vitticeps Family Colubridae Genus Diadophis D. punctatus Genus Elaphe Elap. carinata Genus Euprepiophis E. mandarinus Genus Lampropeltis L. californiae Genus Natrix N. natrix Genus Pantherophis P. guttatus Genus Pituophis P. catenifer Genus Thamnophis T. sirtalis Family Crotaphytidae Genus Crotaphytus C. collaris Family Dactyloidae Genus Anolis A. carolinensis Family Gekkonidae Genus Phyllodactylus P. xanti Family Lacertidae Genus Eremias E. carinata E. multiocellata Genus Lacerta L. agilis Genus Zootoca Z. vivipara Family Phrynosomatidae Genus Sceloporus S. undulatus Family Viperidae Genus Crotalus C. viridis Genus Gloydius G. brevicaudus Genus Vipera V. berus Order Testudines Family Chelydridae Genus Chelydra C. serpentina Family Emydidae Genus Chrysemys C. picta Genus Glyptemys G. insculpta Genus Malaclemys M. terrapin Genus Trachemys T. elegans Family Geoemydidae Genus Mauremys M. reevesii Family Testudinidae Genus Gopherus G. polyphemus Genus Terrapene T. carolina Genus Testudo T. hermanni Click on Reptilia to select a species		-	-	-	-
🐸 Amphibia Amphibia › › › Order Anura Family Bufonidae Genus Anaxyrus A. americanus Genus Bufo B. bufo B. gargarizans B. raddei Genus Bufotes B. pewzowi Genus Rhinella R. marina Family Dicroglossidae Genus Fejervarya F. multistriata Family Hylidae Genus Hyla Hyl. chinensis H. cinerea Genus Pseudacris P. regilla Family Ranidae Genus Lithobates L. catesbeianus L. pipiens Genus Nanorana N. parkeri Genus Pelophylax P. esculentus P. nigromaculatus Genus Rana R. dybowskii R. sylvatica R. temporaria Family Scaphiopodidae Genus Scaphiopus S. holbrookii Genus Spea S. bombifrons Order Caudata Family Ambystomatidae Genus Ambystoma A. tigrinum Family Cryptobranchidae Genus Andrias A. davidianus Family Hynobiidae Genus Hynobius H. chinensis Family Salamandridae Genus Notophthalmus N. viridescens Genus Pleurodeles P. waltl Genus Salamandra S. salamandra Click on Amphibia to select a species		-	-	-	-
🦋 Insecta Insecta › › › Order Coleoptera Family Cerambycidae Genus Anoplophora A. glabripennis Family Chrysomelidae Genus Diabrotica D. virgifera Genus Leptinotarsa L. decemlineata Family Coccinellidae Genus Coccinella C. septempunctata Family Tenebrionidae Genus Tribolium T. castaneum Order Diptera Family Culicidae Genus Anopheles A. gambiae Genus Culex C. pipiens Family Drosophilidae Genus Drosophila D. melanogaster Order Hemiptera Family Cimicidae Genus Cimex C. lectularius Family Delphacidae Genus Nilaparvata N. lugens Order Hymenoptera Family Apidae Genus Ceratina C. calcarata Family Pteromalidae Genus Nasonia N. vitripennis Family Vespidae Genus Polistes P. dominula Order Lepidoptera Family Bombycidae Genus Bombyx B. mori Family Crambidae Genus Chilo C. partellus Family Noctuidae Genus Helicoverpa H. armigera Genus Spodoptera S. frugiperda Family Nymphalidae Genus Danaus D. plexippus Genus Heliconius H. melpomene Family Papilionidae Genus Papilio P. machaon Family Sphingidae Genus Manduca M. sexta Order Orthoptera Family Acrididae Genus Locusta L. migratoria Click on Insecta to select a species		-	-	-	-
🐌 Gastropoda Gastropoda › › › Order Stylommatophora Family Achatinidae Genus Lissachatina L. immaculata Family Helicidae Genus Cornu C. aspersum Genus Helix H. pomatia Click on Gastropoda to select a species		-	-	-	-

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